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Abstract In recent years, multidrug resistant virulent strains of E. coli are circulating in broiler flocks and are implicated in cases of high mortalities causing significant economic losses in poultry industry. Therefore, the goal of the current study was the detection of the most important virulence genes among MDR E. coli isolates from different sources with relation to their resistance genes. In the present work, 242 specimens were collected from different sources (150 broiler organs with a previous history of colibacillosis, 61 chicken by-products and 31 water tank samples) during all seasons of the year from March 2011 to July 20 l3 in Sharkia province,[Summer (84), autumn (54), winter (38) and spring (66)]. Microbiological analysis of the collected samples revealed that E. coli was recovered with a percentage of 20.2%; 22.7% from broiler organs, 14.8% from broiler by-products and 19.4% from water tanks. Sas so breeds revealed the higher recovery rate of E. coli isolates (25.7%). Moreover, the highest isolation rate of E. coli was in summer (33.3%). APT 20 E protocol was applied on randomly selected E. coli isolates from different sources as a recent standardized and efficient identification protocol. Results of APT 20 E confirmed those of the conventional biochemical identification of E. coli isolates. Serotyping of E. coli isolates revealed 8 different serotypes from different sources with a dominance 026:K60 and 0114:K90 |